PROTEOMICS PUBLICATIONS

Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP

Leduc et al., bioRxiv, 2023

Northeastern University, Parallel Squared Technology Institute

 

Development of novel isobaric tags enables accurate and sensitive multiplexed proteomics using complementary ions

Li, Ma et al., Analytical and Bioanalytical Chemistry, 2023

University of Wisconsin-Madison, School of Pharmacy

 

Rapid, One-Step Sample Processing for Label-Free Single-Cell Proteomics

Madisyn Johnston et al., Journal of the American Society for Mass Spectrometry, 2023

Brigham Young University, Department of Chemistry and Biochemistry

 

An automated and fast sample preparation workflow for laser microdissection guided ultrasensitive proteomics

Makhmut, Qin et al., bioRxiv, 2023

MDC Berlin (Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association), Spatial Proteomics Group

 

Optimizing single cell proteomics using trapped ion mobility spectrometry for label-free experiments

Mun et al., Analyst, 2023

Mayo Clinic

 

High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell

Ye, Sabatier et al., bioRxiv, 2023

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

 

An automated nanowell-array workflow for quantitative multiplexed single-cell proteomics sample preparation at high sensitivity

Ctortecka et al. Molecular & Cellular Proteomics, 2023

Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Broad Institute of MIT and Harvard, Cellenion SASU, Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), The Gregor Mendel Institute of Molecular Plant Biology of the Austrian Academy of Sciences (GMI)

 

High Throughput Single Cell Proteomic Analysis of Organ Derived Heterogeneous Cell Populations by Nanoflow Dual Trap Single Column Liquid Chromatography

Kreimer, Parker et al., bioRxiv, 2023

Cedars-Sinai Medical Center, Advanced Clinical Biosystems Research Institute

 

Sample Preparation Methods for Targeted Single-Cell Proteomics

Eshghi, Goodlett et al., Journal of Proteome Research, 2023

University of Victoria, Genome BC Proteomics Centre, British Columbia

 

Complete Workflow for High Throughput Human Single Skeletal Muscle Fiber Proteomics

Momenzadeh et al., bioRxiv, 2023

Cedars-Sinai Medical Center, Advanced Clinical Biosystems Research Institute

 

A review of the current state of single-cell proteomics and future perspective

Ahmad & Budnik, Analytical and Bioanalytical Chemistry, 2023

Wyss Institute for Biologically Inspired Engineering at Harvard University

 

HyperSCP: Combining Isotopic and Isobaric Labeling for Higher Throughput Single-Cell Proteomics

Liang et al., Analytical Chemistry, 2023

Brigham Young University, Department of Chemistry and Biochemistry

 

Exploring functional protein covariation across single cells using nPOP

Leduc et al., Genome Biology, 2022

Northeastern University, Boston (Departments of Bioengineering, Biology, Chemistry and Chemical Biology; Single Cell Proteomics Center; Barnett Institute)

 

An automated workflow for label-free and multiplexed single cell proteomics sample preparation at unprecedented sensitivity

Hartlmayr, Ctortecka et al., bioRxiv, 2021

IMP Vienna (Research Institute of Molecular Pathology), VBC (Vienna BioCenter)

 

Multiplexed single-cell proteomics using SCoPE2

Petelski et al., Nature Protocols, 2021

Northeastern University, Boston (Department of Bioengineering)

 

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

Woo et al., Nature Communications, 2021

PNNL (Pacific Northwest National Laboratory)

 

Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics

Huffman et al., Nature Methods, 2023

Northeastern University, Boston (Departments of Bioengineering, Biology, Chemistry and Chemical Biology; Single Cell Center; Barnett Institute)

 

Semiquantitative Analysis for High-Speed Mapping Applications of Biological Samples Using LA-ICP-TOFMS

Metarapi et al., Analytical Chemistry, 2023

University of Vienna, National Institute of Chemistry (Slovenia), Medical University of Vienna

 

Quantification in bioimaging by LA-ICPMS – Evaluation of isotope dilution and standard addition enabled by micro-droplets

Schweikert et al., Analytica Chimica Acta, 2022

University of Vienna + National Institute of Chemistry (Slovenia) + Medical University of Vienna

 

Data-Dependent Acquisition with Precursor Coisolation Improves Proteome Coverage and Measurement Throughput for Label-Free Single-Cell Proteomics

Truong et al., bioRxiv, 2022

BYU (Brigham Young University)

 

Cell-Type-Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform

Balasubramanian et al., Current Protocols, 2021

EMSL at PNNL (Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory), BYU (Brigham Young University), Department of Plant Sciences, University of California Davis, Department of Plant Sciences, University of Tennessee

 

Cisplatin Uptake in Macrophage Subtypes at the Single-Cell Level by LA-ICP-TOFMS Imaging

Schoeberl et al., Analytical Chemistry, 2021

Institute of Analytical Chemistry, Faculty of Chemistry, University of Vienna

 

Micro-droplet-based calibration for quantitative elemental bioimaging by LA-ICPMS

Schweikert et al., Analytical and Bioanalytical Chemistry, 2021

Institute of Analytical Chemistry, Faculty of Chemistry, University of Vienna

 

High-throughput spatiotemporal monitoring of single-cell secretions via plasmonic microwell arrays

Ansarian et al., Nature Biomedical Engineering, 2023

EPFL (Ecole Polytechnique Fédérale de Lausanne)

 

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments

Gatto et al., Nature Methods, 2023

UCL (Université Catholique de Louvain)

 

High-throughput spatiotemporal monitoring of single-cell secretions via plasmonic microwell arrays

Ansarian et al., Nature Biomedical Engineering, 2023

EPFL (Ecole Polytechnique Fédérale de Lausanne)

 

Uncovering biology by single-cell proteomics

Mansuri et al., Communications Biology, 2023

Yale School of Medicine

 

Increasing the throughput of sensitive proteomics by plexDIA

Derks et al., Nature Biotechnology, 2022

Northeastern University, Charité Universitätsmedizin Berlin, Bruker

 

Real-time monitoring of single-cell secretion with a high-throughput nanoplasmonic microarray

Liu et al., Biosensors and Bioelectronics, 2022

EPFL (Ecole Polytechnique Fédérale de Lausanne)

 

Recent advances in the field of single-cell proteomics

Schoof et al., Translational Oncology, 2022

DTU (Technical University of Denmark), Department of Biotechnology and Biomedicine

 

Label-Free Profiling of up to 200 Single-Cell Proteomes per Day Using a Dual-Column Nanoflow Liquid Chromatography Platform

Webber et al., Analytical Chemistry, 2022

BYU (Brigham Young University)

 

Arraying of Single Cells for Quantitative High Throughput Laser Ablation ICP-TOF-MS

Löhr et al., Analytical Chemistry, 2019

BAM (Bundesanstalt für Materialforschung und -prüfung) Berlin, Department of Chemistry and SALSA, Humboldt Universität zu Berlin

 

Arraying of single cells for high throughput elemental analysis using LA-ICP-MS

Konrad Löhr, 2019

BAM (Bundesanstalt für Materialforschung und -prüfung) Berlin, Department of Chemistry and SALSA, Humboldt Universität zu Berlin