cellenPIPE v1.1 Released

Watch the workflow video:

New options and features implemented in V1.1


  • Web App Interface: Choose a list of genes of interest
  • Automated filtering based on dynamic thresholds determination with outliers’ detection.
  • Automated determination of number of dimensions used in t-SNE reduction dimension.
  • Automated determination of clustering resolution to maximize the cell diversity.
  • Determination of gene markers per clusters/conditions using MAST and visualization.
  • Trajectory analysis using slingshot library, marker genes detection of the pseudotimes and visualization.
  • Specific target gene expression visualization per clusters and in the t-SNE visualization.
  • Single HTML report with information tables exportable.

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