Watch the workflow video:
New options and features implemented in V1.1
- Web App Interface: Choose a list of genes of interest
- Automated filtering based on dynamic thresholds determination with outliers’ detection.
- Automated determination of number of dimensions used in t-SNE reduction dimension.
- Automated determination of clustering resolution to maximize the cell diversity.
- Determination of gene markers per clusters/conditions using MAST and visualization.
- Trajectory analysis using slingshot library, marker genes detection of the pseudotimes and visualization.
- Specific target gene expression visualization per clusters and in the t-SNE visualization.
- Single HTML report with information tables exportable.